Electrostatic determinants of voltage sensitivity in ion channels: Simulations of sliding-helix mechanisms
نویسندگان
چکیده
Electrical signaling via voltage-gated ion channels depends upon the function of the voltage sensor (VS), identified with the S1–S4 domain of voltage-gated K channels. Here we investigate some physical aspects of the sliding-helix model of the VS using simulations based on VS charges, linear dielectrics and whole-body motion. Model electrostatics in voltage-clamped boundary conditions are solved using a boundary element method. The statistical mechanical consequences of the electrostatic configurational energy are computed to gain insight into the sliding-helix mechanism and to predict experimentally measured ensemble properties such as gating charge displaced by an applied voltage. Those consequences and ensemble properties are investigated for variations of: S4 configuration (αand 310-helical), intrinsic counter-charges, protein polarizability, geometry of the gating canal, screening of S4 charges by the baths, and protein charges located at the bath interfaces. We find that the sliding helix VS has an inherent electrostatic stability and its function as a VS is robust in the parameter space explored. Maximal charge displacement is limited by geometry, specifically the range of movement where S4 charges and counter-charges overlap in the region of weak dielectric. The steepness of charge rearrangement in the physiological voltage range is sensitive to the landscape of electrostatic energy: energy differences of <2 kT have substantial consequences. Such variations of energy landscape are produced by all variations of model features tested. The amount of free energy per unit voltage that a sliding-helix VS can deliver to other parts of the channel (conductance voltage sensitivity) is limited by both the maximal displaced charge and the steepness of charge redistribution by voltage (sensor voltage sensitivity). 1 ar X iv :1 11 2. 29 94 v1 [ qbi o. B M ] 1 3 D ec 2 01 1 Electrostatics of voltage sensitivity
منابع مشابه
Voltage sensing in ion channels: mesoscale simulations of biological devices.
Electrical signaling via voltage-gated ion channels depends upon the function of a voltage sensor (VS), identified with the S1-S4 domain in voltage-gated K(+) channels. Here we investigate some energetic aspects of the sliding-helix model of the VS using simulations based on VS charges, linear dielectrics, and whole-body motion. Model electrostatics in voltage-clamped boundary conditions are so...
متن کاملTheoretical Studies of Structure-Function Relationships in Kv Channels: Electrostatics of the Voltage Sensor
Voltage-gated ion channels mediate electrical excitability of cellular membranes. Reduced models of the voltage sensor (VS) of Kv channels produce insight into the electrostatic physics underlying the response of the highly positively charged S4 transmembrane domain to changes in membrane potential and other electrostatic parameters. By calculating the partition function computed from the elect...
متن کاملSimulation study of the transport properties of ions through ion channels serving as primary components of a nanobiosensor
Ion channels are naturally occurring pores through the proteins that regulate the passage of ions and thus maintain the concentration of ions inside and outside the cell. The ion channels control many physiological functions and they can show selectivity for a specific ion. Ion channels are mostly observed in nerve cells and muscle cells. The influx of ions into cells can be regulated by a gate...
متن کاملSimulation study of the transport properties of ions through ion channels serving as primary components of a nanobiosensor
Ion channels are naturally occurring pores through the proteins that regulate the passage of ions and thus maintain the concentration of ions inside and outside the cell. The ion channels control many physiological functions and they can show selectivity for a specific ion. Ion channels are mostly observed in nerve cells and muscle cells. The influx of ions into cells can be regulated by a gate...
متن کاملMechanisms of permeation and selectivity in calcium channels.
The mechanisms underlying ion transport and selectivity in calcium channels are examined using electrostatic calculations and Brownian dynamics simulations. We model the channel as a rigid structure with fixed charges in the walls, representing glutamate residues thought to be responsible for ion selectivity. Potential energy profiles obtained from multi-ion electrostatic calculations provide i...
متن کامل